by Stéphanie Portet
Abstract:
An aggregation model with explicit expression of association rate constants is considered to study in vitro type III intermediate filament length distribution dynamics. Different assumptions on the properties of filaments and probability of aggregation are considered, leading to four models. Fitting of model responses to experimental data leads to the identification of the most appropriate model to represent each time point of the assembly. A combination of models allows the construction of a mixed model that represents well the complete assembly dynamics: it is found that the rate constants decrease with respect to filament size when the aggregation involves at least one short filament, whereas for longer filaments they are almost independent of size. The flexible nature of filaments is thus important in the assembly of intermediate filaments.
Reference:
Dynamics of in vitro intermediate filament length distributions. (Stéphanie Portet), In Journal of Theoretical Biology, volume 332, 2013.
Bibtex Entry:
@ARTICLE{Portet2013,
author = {Stéphanie Portet},
title = {Dynamics of in vitro intermediate filament length distributions.},
journal = {Journal of Theoretical Biology},
year = {2013},
volume = {332},
pages = {20--29},
month = {Sep},
abstract = {An aggregation model with explicit expression of association rate
constants is considered to study in vitro type III intermediate filament
length distribution dynamics. Different assumptions on the properties
of filaments and probability of aggregation are considered, leading
to four models. Fitting of model responses to experimental data leads
to the identification of the most appropriate model to represent
each time point of the assembly. A combination of models allows the
construction of a mixed model that represents well the complete assembly
dynamics: it is found that the rate constants decrease with respect
to filament size when the aggregation involves at least one short
filament, whereas for longer filaments they are almost independent
of size. The flexible nature of filaments is thus important in the
assembly of intermediate filaments.},
doi = {10.1016/j.jtbi.2013.04.004},
institution = {Department of Mathematics, 342 Machray Hall, University of Manitoba,
Winnipeg, MB, Canada R3T 2N2. portets@cc.umanitoba.ca},
keywords = {Animals; Humans; Intermediate Filaments, chemistry/metabolism; Models,
Chemical},
language = {eng},
medline-pst = {ppublish},
owner = {sportet},
pii = {S0022-5193(13)00157-4},
pmid = {23598303},
timestamp = {2013.11.13},
url = {http://dx.doi.org/10.1016/j.jtbi.2013.04.004}
}